AUTOMATIC IDENTIFICATION OF DNA MARKERS BASED ON FEATURES REDUCTION

Carlos M. Travieso, Jordi Solé-Casals, Jesús B. Alonso, Miguel A. Ferrer

2010

Abstract

This paper has implemented a feature reduction based on Independent Components Analysis (ICA) and Principal Component Analysis (PCA) for an automatic supervised identification system of Pejibaye palm DNA markers, using an Artificial Neural Network (ANN) as classifier; obtaining 100% for the classes’ identification. The biochemical parameterization proposed, based on 89 RAPD primer markers applied on haplotypes of Pejibaye races, has correctly been proved for its reduction. The computational times have been studied, obtaining results in real time for test mode. Finally the interesting combination of these techniques (biochemical and computational), gives rise to a formulation of an inexpensive and handy method of origin denomination plant certification.

Paper Citation

in Harvard Style

Travieso C., Solé-Casals J., Alonso J. and Ferrer M. (2010). AUTOMATIC IDENTIFICATION OF DNA MARKERS BASED ON FEATURES REDUCTION . In Proceedings of the Third International Conference on Bio-inspired Systems and Signal Processing - Volume 1: BIOSIGNALS, (BIOSTEC 2010) ISBN 978-989-674-018-4, pages 347-352. DOI: 10.5220/0002335503470352

in Bibtex Style

@conference{biosignals10,
author={Carlos M. Travieso and Jordi Solé-Casals and Jesús B. Alonso and Miguel A. Ferrer},
title={AUTOMATIC IDENTIFICATION OF DNA MARKERS BASED ON FEATURES REDUCTION},
booktitle={Proceedings of the Third International Conference on Bio-inspired Systems and Signal Processing - Volume 1: BIOSIGNALS, (BIOSTEC 2010)},
year={2010},
pages={347-352},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0002335503470352},
isbn={978-989-674-018-4},
}

in EndNote Style

TY - CONF
JO - Proceedings of the Third International Conference on Bio-inspired Systems and Signal Processing - Volume 1: BIOSIGNALS, (BIOSTEC 2010)
TI - AUTOMATIC IDENTIFICATION OF DNA MARKERS BASED ON FEATURES REDUCTION
SN - 978-989-674-018-4
AU - Travieso C.
AU - Solé-Casals J.
AU - Alonso J.
AU - Ferrer M.
PY - 2010
SP - 347
EP - 352
DO - 10.5220/0002335503470352